IL_8BQX_105
3D structure
- PDB id
- 8BQX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQX_105 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.0889
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BQX|1|BQ|G|404
8BQX|1|BQ|U|405
8BQX|1|BQ|G|406
8BQX|1|BQ|A|407
8BQX|1|BQ|A|408
8BQX|1|BQ|A|409
8BQX|1|BQ|U|410
*
8BQX|1|BS|A|13
8BQX|1|BS|C|14
8BQX|1|BS|G|15
8BQX|1|BS|G|16
8BQX|1|BS|A|17
8BQX|1|BS|U|18
8BQX|1|BS|C|19
Current chains
- Chain BQ
- 25S rRNA
- Chain BS
- 5.8S rRNA
Nearby chains
- Chain AX
- 60S ribosomal protein L17-A
- Chain BE
- 60S ribosomal protein L4-A
- Chain BG
- RPL32 isoform 1
Coloring options: