IL_8BQX_107

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGACAUGGUGUUUUGUAUUUCACUGG*CAUAAUG

Length

34 nucleotides

Bulged bases

8BQX|1|BQ|A|440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BQX|1|BQ|C|435
8BQX|1|BQ|A|436
8BQX|1|BQ|G|437
8BQX|1|BQ|A|438
8BQX|1|BQ|C|439
8BQX|1|BQ|A|440
8BQX|1|BQ|U|441
8BQX|1|BQ|G|442
8BQX|1|BQ|G|443
8BQX|1|BQ|U|444
8BQX|1|BQ|G|445
8BQX|1|BQ|U|446
8BQX|1|BQ|U|447
8BQX|1|BQ|U|448
8BQX|1|BQ|U|449
8BQX|1|BQ|G|450
8BQX|1|BQ|U|451
8BQX|1|BQ|A|486
8BQX|1|BQ|U|487
8BQX|1|BQ|U|488
8BQX|1|BQ|U|489
8BQX|1|BQ|C|490
8BQX|1|BQ|A|491
8BQX|1|BQ|C|492
8BQX|1|BQ|U|493
8BQX|1|BQ|G|494
8BQX|1|BQ|G|495
*
8BQX|1|BQ|C|618
8BQX|1|BQ|A|619
8BQX|1|BQ|U|620
8BQX|1|BQ|A|621
8BQX|1|BQ|A|622
8BQX|1|BQ|U|623
8BQX|1|BQ|G|624

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BG

RPL32 isoform 1

Chain BK

60S ribosomal protein L33-A

Chain BM

60S ribosomal protein L6-B