IL_8BQX_111

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_111 not in the Motif Atlas

Homologous match to IL_8C3A_023

Geometric discrepancy: 0.1217

The information below is about IL_8C3A_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8BQX|1|BQ|G|668
8BQX|1|BQ|U|669
8BQX|1|BQ|C|670
*
8BQX|1|BQ|G|792
8BQX|1|BQ|C|793
8BQX|1|BQ|U|794

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AJ

60S ribosomal protein L13-A

Chain AR

60S ribosomal protein L28

Chain BB

60S ribosomal protein L18-A

Chain BE

60S ribosomal protein L4-A