IL_8BQX_116

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_116 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1294

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BQX|1|BQ|C|758
8BQX|1|BQ|U|759
8BQX|1|BQ|G|760
8BQX|1|BQ|A|761
8BQX|1|BQ|U|762
8BQX|1|BQ|G|763
*
8BQX|1|BQ|C|768
8BQX|1|BQ|G|769
8BQX|1|BQ|G|770
8BQX|1|BQ|A|771
8BQX|1|BQ|U|772
8BQX|1|BQ|G|773

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AJ

60S ribosomal protein L13-A

Chain AP

60S ribosomal protein L42-A

Chain AR

60S ribosomal protein L28