IL_8BQX_131

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_131 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.1411

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8BQX|1|BQ|A|1006
8BQX|1|BQ|U|1007
8BQX|1|BQ|U|1008
8BQX|1|BQ|A|1009
*
8BQX|1|BQ|U|1041
8BQX|1|BQ|U|1042
8BQX|1|BQ|C|1043
8BQX|1|BQ|U|1044

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BD

RPL10 isoform 1

Chain BI

60S ribosomal protein L5