IL_8BQX_133

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

8BQX|1|BQ|C|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_133 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3918

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8BQX|1|BQ|U|1014
8BQX|1|BQ|U|1015
8BQX|1|BQ|C|1016
8BQX|1|BQ|C|1017
8BQX|1|BQ|G|1018
*
8BQX|1|BQ|U|1034
8BQX|1|BQ|G|1035
8BQX|1|BQ|A|1036

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AG

RPL11B isoform 1

Chain BD

RPL10 isoform 1