IL_8BQX_166

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8BQX|1|BQ|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_166 not in the Motif Atlas

Geometric match to IL_4V9F_062

Geometric discrepancy: 0.1276

The information below is about IL_4V9F_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8BQX|1|BQ|A|1901
8BQX|1|BQ|G|1902
8BQX|1|BQ|U|1903
8BQX|1|BQ|C|1904
8BQX|1|BQ|G|1905
8BQX|1|BQ|G|1906
*
8BQX|1|BQ|C|2333
8BQX|1|BQ|U|2334
8BQX|1|BQ|G|2335
8BQX|1|BQ|U|2336

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain BA

60S ribosomal protein L3