IL_8BQX_172

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_172 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.3086

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8BQX|1|BQ|C|1988
8BQX|1|BQ|U|1989
8BQX|1|BQ|U|1990
8BQX|1|BQ|G|1991
*
8BQX|1|BQ|C|2030
8BQX|1|BQ|U|2031
8BQX|1|BQ|U|2032
8BQX|1|BQ|G|2033

Current chains

Chain BQ

25S rRNA

Nearby chains