IL_8BQX_185

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8BQX|1|BQ|U|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_185 not in the Motif Atlas

Homologous match to IL_8C3A_098

Geometric discrepancy: 0.0809

The information below is about IL_8C3A_098

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8BQX|1|BQ|G|2409
8BQX|1|BQ|U|2410
8BQX|1|BQ|U|2411
*
8BQX|1|BQ|A|2811
8BQX|1|BQ|C|2812

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L28

Chain BE

60S ribosomal protein L4-A