3D structure

PDB id
8BQX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UCAAG*CGACA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BQX_199 not in the Motif Atlas
Homologous match to IL_8C3A_114
Geometric discrepancy: 0.1792
The information below is about IL_8C3A_114
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65585.1
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

8BQX|1|BQ|U|2835
8BQX|1|BQ|C|2836
8BQX|1|BQ|A|2837
8BQX|1|BQ|A|2838
8BQX|1|BQ|G|2839
*
8BQX|1|BQ|C|2849
8BQX|1|BQ|G|2850
8BQX|1|BQ|A|2851
8BQX|1|BQ|C|2852
8BQX|1|BQ|A|2853

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain AO
60S ribosomal protein L40-A
Chain BD
RPL10 isoform 1

Coloring options:


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