IL_8BQX_249

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUCGGG*CAAUUAACGAUC

Length

19 nucleotides

Bulged bases

8BQX|1|BQ|A|2088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BQX|1|BQ|G|1948
8BQX|1|BQ|G|1949
8BQX|1|BQ|U|1950
8BQX|1|BQ|C|1951
8BQX|1|BQ|G|1952
8BQX|1|BQ|G|1953
8BQX|1|BQ|G|1954
*
8BQX|1|BQ|C|2087
8BQX|1|BQ|A|2088
8BQX|1|BQ|A|2089
8BQX|1|BQ|U|2090
8BQX|1|BQ|U|2091
8BQX|1|BQ|A|2092
8BQX|1|BQ|A|2093
8BQX|1|BQ|C|2094
8BQX|1|BQ|G|2095
8BQX|1|BQ|A|2096
8BQX|1|BQ|U|2097
8BQX|1|BQ|C|2098

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain V

40S ribosomal protein S8-A

Chain X

40S ribosomal protein S11-A