3D structure

PDB id
8BQX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GUCAGACGCAGCGG*CUUGUUGUAGACGGC
Length
29 nucleotides
Bulged bases
8BQX|1|BQ|U|2044, 8BQX|1|BQ|C|2050
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8BQX|1|BQ|G|1969
8BQX|1|BQ|U|1970
8BQX|1|BQ|C|1971
8BQX|1|BQ|A|1972
8BQX|1|BQ|G|1973
8BQX|1|BQ|A|1974
8BQX|1|BQ|C|1975
8BQX|1|BQ|G|1976
8BQX|1|BQ|C|1977
8BQX|1|BQ|A|1978
8BQX|1|BQ|G|1979
8BQX|1|BQ|C|1980
8BQX|1|BQ|G|1981
8BQX|1|BQ|G|1982
*
8BQX|1|BQ|C|2039
8BQX|1|BQ|U|2040
8BQX|1|BQ|U|2041
8BQX|1|BQ|G|2042
8BQX|1|BQ|U|2043
8BQX|1|BQ|U|2044
8BQX|1|BQ|G|2045
8BQX|1|BQ|U|2046
8BQX|1|BQ|A|2047
8BQX|1|BQ|G|2048
8BQX|1|BQ|A|2049
8BQX|1|BQ|C|2050
8BQX|1|BQ|G|2051
8BQX|1|BQ|G|2052
8BQX|1|BQ|C|2053

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain AI
RPL38 isoform 1

Coloring options:

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