IL_8BQX_255
3D structure
- PDB id
- 8BQX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUUGA*UACAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQX_255 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.2242
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
8BQX|1|BQ|U|2717
8BQX|1|BQ|U|2718
8BQX|1|BQ|U|2719
8BQX|1|BQ|G|2720
8BQX|1|BQ|A|2721
*
8BQX|1|BQ|U|2735
8BQX|1|BQ|A|2736
8BQX|1|BQ|C|2737
8BQX|1|BQ|A|2738
8BQX|1|BQ|A|2739
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AP
- 60S ribosomal protein L42-A
- Chain AV
- 60S ribosomal protein L29
- Chain BB
- 60S ribosomal protein L18-A
- Chain BI
- 60S ribosomal protein L5
- Chain BJ
- 60S ribosomal protein L21-A
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