IL_8BQX_257

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUA*UAAGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_257 not in the Motif Atlas

Homologous match to IL_8P9A_338

Geometric discrepancy: 0.1023

The information below is about IL_8P9A_338

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07469.2

Basepair signature

cWW-tSH-cWW-cSH-R-cWW

Number of instances in this motif group

3

Unit IDs

8BQX|1|BQ|C|2889
8BQX|1|BQ|A|2890
8BQX|1|BQ|U|2891
8BQX|1|BQ|A|2892
*
8BQX|1|BQ|U|2909
8BQX|1|BQ|A|2910
8BQX|1|BQ|A|2911
8BQX|1|BQ|G|2912
8BQX|1|BQ|C|2913
8BQX|1|BQ|G|2914

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain AD

60S ribosomal protein L9-A

Chain AO

60S ribosomal protein L40-A

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3