IL_8BR8_002
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GCGGAUG*CUGAACC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_002 not in the Motif Atlas
- Geometric match to IL_5TBW_015
- Geometric discrepancy: 0.0977
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BR8|1|LD|G|14
8BR8|1|LD|C|15
8BR8|1|LD|G|16
8BR8|1|LD|G|17
8BR8|1|LD|A|18
8BR8|1|LD|U|19
8BR8|1|LD|G|20
*
8BR8|1|Lt|C|354
8BR8|1|Lt|U|355
8BR8|1|Lt|G|356
8BR8|1|Lt|A|357
8BR8|1|Lt|A|358
8BR8|1|Lt|C|359
8BR8|1|Lt|C|360
Current chains
- Chain LD
- 5.8S rRNA
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LC
- Ribosomal protein L4
- Chain LQ
- Ribosomal protein L17
- Chain Lf
- Ribosomal protein L32
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