IL_8BR8_007

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8BR8|1|LD|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_007 not in the Motif Atlas

Geometric match to IL_9M86_004

Geometric discrepancy: 0.2935

The information below is about IL_9M86_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

8BR8|1|LD|G|134
8BR8|1|LD|C|135
8BR8|1|LD|G|136
*
8BR8|1|Lt|C|7
8BR8|1|Lt|C|8

Current chains

Chain LD

5.8S rRNA

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LI

60S ribosomal protein L7a

Chain LO

Ribosomal protein L15

Chain LY

Ribosomal protein L23A