IL_8BR8_011
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- AACUC*GAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_011 not in the Motif Atlas
- Geometric match to IL_5TBW_376
- Geometric discrepancy: 0.1881
- The information below is about IL_5TBW_376
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.9
- Basepair signature
- cWW-cSH-cWS-tSW-L-R-cWW-R
- Number of instances in this motif group
- 9
Unit IDs
8BR8|1|LE|A|32
8BR8|1|LE|A|33
8BR8|1|LE|C|34
8BR8|1|LE|U|35
8BR8|1|LE|C|36
*
8BR8|1|LE|G|42
8BR8|1|LE|A|43
8BR8|1|LE|A|44
8BR8|1|LE|U|45
8BR8|1|LE|U|46
Current chains
- Chain LE
- 5S rRNA
Nearby chains
- Chain LF
- Ribosomal protein L5
- Chain LL
- Ribosomal protein L11
- Chain Lt
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: