IL_8BR8_013
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- AUC*GU
- Length
- 5 nucleotides
- Bulged bases
- 8BR8|1|LE|U|85
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_013 not in the Motif Atlas
- Homologous match to IL_4V9F_107
- Geometric discrepancy: 0.3369
- The information below is about IL_4V9F_107
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 170
Unit IDs
8BR8|1|LE|A|84
8BR8|1|LE|U|85
8BR8|1|LE|C|86
*
8BR8|1|LE|G|93
8BR8|1|LE|U|94
Current chains
- Chain LE
- 5S rRNA
Nearby chains
- Chain LH
- Ribosomal protein L7
- Chain LK
- Ribosomal protein L10
- Chain LT
- 60S ribosomal protein L18a
- Chain Lt
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: