IL_8BR8_018

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGACG*CCGCUCAAAAGAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_018 not in the Motif Atlas

Geometric match to IL_4V9F_014

Geometric discrepancy: 0.2684

The information below is about IL_4V9F_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31504.1

Basepair signature

cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

1

Unit IDs

8BR8|1|Lt|G|328
8BR8|1|Lt|G|329
8BR8|1|Lt|A|330
8BR8|1|Lt|C|331
8BR8|1|Lt|G|332
*
8BR8|1|Lt|C|341
8BR8|1|Lt|C|342
8BR8|1|Lt|G|343
8BR8|1|Lt|C|344
8BR8|1|Lt|U|345
8BR8|1|Lt|C|346
8BR8|1|Lt|A|347
8BR8|1|Lt|A|348
8BR8|1|Lt|A|349
8BR8|1|Lt|A|350
8BR8|1|Lt|G|351
8BR8|1|Lt|A|352
8BR8|1|Lt|C|353

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LG

Ribosomal protein L39

Chain LQ

Ribosomal protein L17

Chain LZ

Ribosomal protein L26