IL_8BR8_032

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_032 not in the Motif Atlas

Homologous match to IL_5TBW_039

Geometric discrepancy: 0.2532

The information below is about IL_5TBW_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8BR8|1|Lt|G|712
8BR8|1|Lt|A|713
*
8BR8|1|Lt|U|763
8BR8|1|Lt|C|764
8BR8|1|Lt|C|765

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LE

5S ribosomal RNA; 5S rRNA

Chain LF

Ribosomal protein L5

Chain LK

Ribosomal protein L10

Chain LU

Ribosomal protein L21