IL_8BR8_034

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCCG*CCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_034 not in the Motif Atlas

Homologous match to IL_5TBW_041

Geometric discrepancy: 0.1752

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8BR8|1|Lt|G|720
8BR8|1|Lt|C|721
8BR8|1|Lt|C|722
8BR8|1|Lt|G|723
*
8BR8|1|Lt|C|754
8BR8|1|Lt|C|755
8BR8|1|Lt|C|756
8BR8|1|Lt|C|757

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LF

Ribosomal protein L5

Chain LK

Ribosomal protein L10