IL_8BR8_037

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCUC*GACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_037 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.2163

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8BR8|1|Lt|C|830
8BR8|1|Lt|C|831
8BR8|1|Lt|U|832
8BR8|1|Lt|C|833
*
8BR8|1|Lt|G|845
8BR8|1|Lt|A|846
8BR8|1|Lt|C|847
8BR8|1|Lt|G|848

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LE

5S ribosomal RNA; 5S rRNA

Chain LH

Ribosomal protein L7

Chain LU

Ribosomal protein L21

Chain Lc

60S ribosomal protein L29