IL_8BR8_040
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CCCGCGGAAC*GGAAAAUGGAGCGCGCCGGAG
- Length
- 31 nucleotides
- Bulged bases
- 8BR8|1|Lt|C|898, 8BR8|1|Lt|C|900, 8BR8|1|Lt|A|1002, 8BR8|1|Lt|G|1016
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BR8|1|Lt|C|896
8BR8|1|Lt|C|897
8BR8|1|Lt|C|898
8BR8|1|Lt|G|899
8BR8|1|Lt|C|900
8BR8|1|Lt|G|901
8BR8|1|Lt|G|902
8BR8|1|Lt|A|903
8BR8|1|Lt|A|904
8BR8|1|Lt|C|905
*
8BR8|1|Lt|G|999
8BR8|1|Lt|G|1000
8BR8|1|Lt|A|1001
8BR8|1|Lt|A|1002
8BR8|1|Lt|A|1003
8BR8|1|Lt|A|1004
8BR8|1|Lt|U|1005
8BR8|1|Lt|G|1006
8BR8|1|Lt|G|1007
8BR8|1|Lt|A|1008
8BR8|1|Lt|G|1009
8BR8|1|Lt|C|1010
8BR8|1|Lt|G|1011
8BR8|1|Lt|C|1012
8BR8|1|Lt|G|1013
8BR8|1|Lt|C|1014
8BR8|1|Lt|C|1015
8BR8|1|Lt|G|1016
8BR8|1|Lt|G|1017
8BR8|1|Lt|A|1018
8BR8|1|Lt|G|1019
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LB
- Ribosomal protein L3
- Chain LE
- 5S ribosomal RNA; 5S rRNA
- Chain LJ
- Ribosomal protein L6
- Chain LK
- Ribosomal protein L10
- Chain LN
- Ribosomal protein L14
- Chain LP
- Ribosomal protein L13a
- Chain LT
- 60S ribosomal protein L18a
- Chain Lg
- Ribosomal protein L35a
- Chain Ls
- Ubiquitin/Ribosomal protein L40e
Coloring options: