IL_8BR8_041

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8BR8|1|Lt|C|908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_041 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.1657

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8BR8|1|Lt|G|907
8BR8|1|Lt|C|908
8BR8|1|Lt|G|909
*
8BR8|1|Lt|C|996
8BR8|1|Lt|C|997

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LE

5S ribosomal RNA; 5S rRNA

Chain LJ

Ribosomal protein L6

Chain LT

60S ribosomal protein L18a

Chain Ls

Ubiquitin/Ribosomal protein L40e