IL_8BR8_045

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_045 not in the Motif Atlas

Homologous match to IL_8C3A_064

Geometric discrepancy: 0.5764

The information below is about IL_8C3A_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8BR8|1|Lt|G|1088
8BR8|1|Lt|C|1089
8BR8|1|Lt|G|1090
*
8BR8|1|Lt|C|1097
8BR8|1|Lt|C|1098
8BR8|1|Lt|C|1099

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LD

5.8S rRNA

Chain Lf

Ribosomal protein L32