IL_8BR8_050

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

8BR8|1|Lt|U|1257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_050 not in the Motif Atlas

Geometric match to IL_3WBM_001

Geometric discrepancy: 0.2206

The information below is about IL_3WBM_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

8BR8|1|Lt|G|1220
8BR8|1|Lt|C|1221
*
8BR8|1|Lt|G|1256
8BR8|1|Lt|U|1257
8BR8|1|Lt|C|1258

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain LD

5.8S rRNA

Chain Lk

Ribosomal protein L37