IL_8BR8_054

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGCAG*CCCGG

Length

10 nucleotides

Bulged bases

8BR8|1|Lt|G|1406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_054 not in the Motif Atlas

Geometric match to IL_6JXM_002

Geometric discrepancy: 0.3156

The information below is about IL_6JXM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14445.1

Basepair signature

cWW-L-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

8BR8|1|Lt|C|1369
8BR8|1|Lt|G|1370
8BR8|1|Lt|C|1371
8BR8|1|Lt|A|1372
8BR8|1|Lt|G|1373
*
8BR8|1|Lt|C|1403
8BR8|1|Lt|C|1404
8BR8|1|Lt|C|1405
8BR8|1|Lt|G|1406
8BR8|1|Lt|G|1407

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lh

Ribosomal protein L34