IL_8BR8_060
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CGUAAC*GGAAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8BR8|1|Lt|A|1563
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_060 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.1199
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.2
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
8BR8|1|Lt|C|1550
8BR8|1|Lt|G|1551
8BR8|1|Lt|U|1552
8BR8|1|Lt|A|1553
8BR8|1|Lt|A|1554
8BR8|1|Lt|C|1555
*
8BR8|1|Lt|G|1560
8BR8|1|Lt|G|1561
8BR8|1|Lt|A|1562
8BR8|1|Lt|A|1563
8BR8|1|Lt|A|1564
8BR8|1|Lt|A|1565
8BR8|1|Lt|G|1566
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LS
- Ribosomal protein L19
- Chain Lo
- 60S ribosomal protein L41
- Chain Lq
- Ribosomal protein L37a
- Chain St
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: