IL_8BR8_062

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CG*CGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_062 not in the Motif Atlas

Homologous match to IL_5TBW_080

Geometric discrepancy: 0.4354

The information below is about IL_5TBW_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74125.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8BR8|1|Lt|C|1579
8BR8|1|Lt|G|1580
*
8BR8|1|Lt|C|1587
8BR8|1|Lt|G|1588
8BR8|1|Lt|G|1589
8BR8|1|Lt|G|1590

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19

Chain SM

Ribosomal protein S11