IL_8BR8_065

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

8BR8|1|Lt|C|1685

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_065 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.1992

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8BR8|1|Lt|C|1684
8BR8|1|Lt|C|1685
8BR8|1|Lt|A|1686
8BR8|1|Lt|G|1687
*
8BR8|1|Lt|C|1733
8BR8|1|Lt|G|1734

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain St

Small subunit ribosomal RNA; SSU rRNA