IL_8BR8_067

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

8BR8|1|Lt|C|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_067 not in the Motif Atlas

Geometric match to IL_1S03_006

Geometric discrepancy: 0.2956

The information below is about IL_1S03_006

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

8BR8|1|Lt|A|1692
8BR8|1|Lt|C|1693
8BR8|1|Lt|G|1694
*
8BR8|1|Lt|C|1725
8BR8|1|Lt|U|1726

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain Lu

Transfer RNA; tRNA

Chain St

Small subunit ribosomal RNA; SSU rRNA