IL_8BR8_070

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GAA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_070 not in the Motif Atlas

Geometric match to IL_1Z7F_002

Geometric discrepancy: 0.1126

The information below is about IL_1Z7F_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8BR8|1|Lt|G|1706
8BR8|1|Lt|A|1707
8BR8|1|Lt|A|1708
*
8BR8|1|Lt|U|1713
8BR8|1|Lt|C|1714
8BR8|1|Lt|C|1715

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lj

Ribosomal protein L36-1

Chain Ln

Ribosomal protein L10a

Chain Lp

Ribosomal protein L44