IL_8BR8_077

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

8BR8|1|Lt|G|2030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_077 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.225

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8BR8|1|Lt|C|1911
8BR8|1|Lt|A|1912
8BR8|1|Lt|G|1913
*
8BR8|1|Lt|C|2028
8BR8|1|Lt|G|2029
8BR8|1|Lt|G|2030
8BR8|1|Lt|G|2031

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain LO

Ribosomal protein L15

Chain Lp

Ribosomal protein L44

Chain Lu

Transfer RNA; tRNA