IL_8BR8_083

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_083 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.1367

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

8BR8|1|Lt|G|2193
8BR8|1|Lt|C|2194
8BR8|1|Lt|C|2195
*
8BR8|1|Lt|G|2211
8BR8|1|Lt|C|2212

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LM

60S ribosomal protein L13

Chain LR

Ribosomal protein L18

Chain Lb

Ribosomal protein L27a

Chain Lp

Ribosomal protein L44