IL_8BR8_100

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCCCUG*CGCACC

Length

12 nucleotides

Bulged bases

8BR8|1|Lt|A|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_100 not in the Motif Atlas

Geometric match to IL_7RQB_107

Geometric discrepancy: 0.2295

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8BR8|1|Lt|G|2518
8BR8|1|Lt|C|2519
8BR8|1|Lt|C|2520
8BR8|1|Lt|C|2521
8BR8|1|Lt|U|2522
8BR8|1|Lt|G|2523
*
8BR8|1|Lt|C|2543
8BR8|1|Lt|G|2544
8BR8|1|Lt|C|2545
8BR8|1|Lt|A|2546
8BR8|1|Lt|C|2547
8BR8|1|Lt|C|2548

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LJ

Ribosomal protein L6

Chain LP

Ribosomal protein L13a

Chain Ls

Ubiquitin/Ribosomal protein L40e