IL_8BR8_113
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CCCCG*CCCG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_113 not in the Motif Atlas
- Geometric match to IL_5J7L_010
- Geometric discrepancy: 0.2703
- The information below is about IL_5J7L_010
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- Minor groove platform related
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
8BR8|1|St|C|104
8BR8|1|St|C|105
8BR8|1|St|C|106
8BR8|1|St|C|107
8BR8|1|St|G|108
*
8BR8|1|St|C|211
8BR8|1|St|C|212
8BR8|1|St|C|213
8BR8|1|St|G|214
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4
- Chain SI
- 40S ribosomal protein S8
Coloring options: