IL_8BR8_117

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCGCCCCGCGG*CAGC

Length

15 nucleotides

Bulged bases

8BR8|1|St|C|175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|St|G|172
8BR8|1|St|C|173
8BR8|1|St|G|174
8BR8|1|St|C|175
8BR8|1|St|C|176
8BR8|1|St|C|177
8BR8|1|St|C|178
8BR8|1|St|G|179
8BR8|1|St|C|180
8BR8|1|St|G|181
8BR8|1|St|G|182
*
8BR8|1|St|C|188
8BR8|1|St|A|189
8BR8|1|St|G|190
8BR8|1|St|C|191

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8

Chain SM

Ribosomal protein S11