IL_8BR8_119

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGGU*AG

Length

6 nucleotides

Bulged bases

8BR8|1|St|G|235

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_119 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2391

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8BR8|1|St|C|233
8BR8|1|St|G|234
8BR8|1|St|G|235
8BR8|1|St|U|236
*
8BR8|1|St|A|258
8BR8|1|St|G|259

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19

Chain Lt

Large subunit ribosomal RNA; LSU rRNA

Chain SI

40S ribosomal protein S8

Chain SM

Ribosomal protein S11