IL_8BR8_125

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AGGGCAAGGU*GCU

Length

13 nucleotides

Bulged bases

8BR8|1|St|G|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|St|A|430
8BR8|1|St|G|431
8BR8|1|St|G|432
8BR8|1|St|G|433
8BR8|1|St|C|434
8BR8|1|St|A|435
8BR8|1|St|A|436
8BR8|1|St|G|437
8BR8|1|St|G|438
8BR8|1|St|U|439
*
8BR8|1|St|G|466
8BR8|1|St|C|467
8BR8|1|St|U|468

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SB

Ribosomal protein S2

Chain SC

Ribosomal protein S3

Chain SK

Ribosomal protein S9

Chain SO

Ribosomal protein S23

Chain Sj

40S ribosomal protein S30