IL_8BR8_133

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGAG*CAGGCCCGUUGGC

Length

17 nucleotides

Bulged bases

8BR8|1|St|C|556, 8BR8|1|St|C|558, 8BR8|1|St|G|559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|St|G|539
8BR8|1|St|G|540
8BR8|1|St|A|541
8BR8|1|St|G|542
*
8BR8|1|St|C|552
8BR8|1|St|A|553
8BR8|1|St|G|554
8BR8|1|St|G|555
8BR8|1|St|C|556
8BR8|1|St|C|557
8BR8|1|St|C|558
8BR8|1|St|G|559
8BR8|1|St|U|560
8BR8|1|St|U|561
8BR8|1|St|G|562
8BR8|1|St|G|563
8BR8|1|St|C|564

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SK

Ribosomal protein S9

Chain Sb

Ribosomal protein S24