IL_8BR8_136

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GA*UGUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_136 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.1308

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

8BR8|1|St|G|619
8BR8|1|St|A|620
*
8BR8|1|St|U|716
8BR8|1|St|G|717
8BR8|1|St|U|718
8BR8|1|St|C|719

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SJ

Ribosomal protein S15A

Chain SM

Ribosomal protein S11

Chain SP

Ribosomal protein S13

Chain Se

Ribosomal protein S27