IL_8BR8_138

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_138 not in the Motif Atlas

Geometric match to IL_3HHN_004

Geometric discrepancy: 0.1558

The information below is about IL_3HHN_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8BR8|1|St|G|626
8BR8|1|St|G|627
8BR8|1|St|C|628
*
8BR8|1|St|G|707
8BR8|1|St|A|708
8BR8|1|St|C|709

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain Ld

Ribosomal protein L30

Chain SD

40S ribosomal protein S3a

Chain SP

Ribosomal protein S13

Chain Se

Ribosomal protein S27