IL_8BR8_143
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GGGCUA*UUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_143 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.1303
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8BR8|1|St|G|739
8BR8|1|St|G|740
8BR8|1|St|G|741
8BR8|1|St|C|742
8BR8|1|St|U|743
8BR8|1|St|A|744
*
8BR8|1|St|U|768
8BR8|1|St|U|769
8BR8|1|St|C|770
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain LA
- Ribosomal protein L2
- Chain Lt
- Large subunit ribosomal RNA; LSU rRNA
- Chain SQ
- Ribosomal protein S14
- Chain Sd
- 40S ribosomal protein S26
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