IL_8BR8_145

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_145 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.1097

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8BR8|1|St|G|749
8BR8|1|St|C|750
8BR8|1|St|G|751
*
8BR8|1|St|C|761
8BR8|1|St|A|762
8BR8|1|St|C|763

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain Lt

Large subunit ribosomal RNA; LSU rRNA

Chain SQ

Ribosomal protein S14

Chain Sd

40S ribosomal protein S26