IL_8BR8_150

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

8BR8|1|St|G|894

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_150 not in the Motif Atlas

Homologous match to IL_4V88_442

Geometric discrepancy: 0.2261

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8BR8|1|St|G|893
8BR8|1|St|G|894
8BR8|1|St|A|895
*
8BR8|1|St|U|1315
8BR8|1|St|U|1316

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain Sd

40S ribosomal protein S26