IL_8BR8_162

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8BR8|1|St|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_162 not in the Motif Atlas

Geometric match to IL_5TBW_131

Geometric discrepancy: 0.3252

The information below is about IL_5TBW_131

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8BR8|1|St|C|1048
8BR8|1|St|U|1049
8BR8|1|St|G|1050
*
8BR8|1|St|C|1059
8BR8|1|St|G|1060

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SU

Ribosomal protein S17

Chain Sd

40S ribosomal protein S26