IL_8BR8_163
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CGGC*GAGGACG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_163 not in the Motif Atlas
- Geometric match to IL_4LFB_050
- Geometric discrepancy: 0.2202
- The information below is about IL_4LFB_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32376.1
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8BR8|1|St|C|1097
8BR8|1|St|G|1098
8BR8|1|St|G|1099
8BR8|1|St|C|1100
*
8BR8|1|St|G|1113
8BR8|1|St|A|1114
8BR8|1|St|G|1115
8BR8|1|St|G|1116
8BR8|1|St|A|1117
8BR8|1|St|C|1118
8BR8|1|St|G|1119
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain SF
- Ribosomal protein S5
- Chain ST
- Ribosomal protein S16
- Chain SU
- Ribosomal protein S17
- Chain Sg
- Ribosomal protein S28
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