IL_8BR8_168

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_168 not in the Motif Atlas

Geometric match to IL_5MWI_007

Geometric discrepancy: 0.1724

The information below is about IL_5MWI_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8BR8|1|St|G|1236
8BR8|1|St|C|1237
8BR8|1|St|G|1238
*
8BR8|1|St|C|1251
8BR8|1|St|C|1252
8BR8|1|St|C|1253

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SR

Ribosomal protein S15

Chain SV

Ribosomal protein S18

Chain SW

Ribosomal protein S19e