IL_8BR8_169

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_169 not in the Motif Atlas

Geometric match to IL_5VCI_002

Geometric discrepancy: 0.1233

The information below is about IL_5VCI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8BR8|1|St|C|1279
8BR8|1|St|C|1280
8BR8|1|St|C|1281
*
8BR8|1|St|G|1291
8BR8|1|St|C|1292
8BR8|1|St|G|1293

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain ST

Ribosomal protein S16

Chain SW

Ribosomal protein S19e

Chain SX

Ribosomal protein S20

Chain Sh

Ribosomal protein S29A