IL_8BR8_183

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCGGUCCCUGCU*ACGGCC

Length

18 nucleotides

Bulged bases

8BR8|1|St|G|114, 8BR8|1|St|U|115, 8BR8|1|St|C|121, 8BR8|1|St|C|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|St|G|111
8BR8|1|St|C|112
8BR8|1|St|G|113
8BR8|1|St|G|114
8BR8|1|St|U|115
8BR8|1|St|C|116
8BR8|1|St|C|117
8BR8|1|St|C|118
8BR8|1|St|U|119
8BR8|1|St|G|120
8BR8|1|St|C|121
8BR8|1|St|U|122
*
8BR8|1|St|A|203
8BR8|1|St|C|204
8BR8|1|St|G|205
8BR8|1|St|G|206
8BR8|1|St|C|207
8BR8|1|St|C|208

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8